Department of Molecular and Cellular Pharmacology, University of Miami, Miller School of Medicine, Miami, FL 33136 , USA
Academic Editor: Michael R. Ladomery
Received: January 13, 2020 | Accepted: March 16, 2020 | Published: March 20, 2020
OBM Genetics 2020, Volume 4, Issue 1, doi:10.21926/obm.genet.2001106
Recommended citation: Park J, Tao XZ, Zhai RG. Knight in Splicing Armor: Alternative Splicing as a Neuroprotective Mechanism. OBM Genetics 2020;4(1):21; doi:10.21926/obm.genet.2001106.
© 2020 by the authors. This is an open access article distributed under the conditions of the Creative Commons by Attribution License, which permits unrestricted use, distribution, and reproduction in any medium or format, provided the original work is correctly cited.
In most cases, newly transcribed precursor mRNA (pre-mRNA) will be spliced to form mature mRNA during or post transcription. In this process, the spliceosome, a complex of small nuclear RNAs and associated proteins (snRNPs), forms on splice sites in pre-mRNA to remove the introns (non-coding regions) and join together exons (coding regions). Under different conditions splicing of a pre-mRNA can occur with different combinations of splice sites, a process known as alternative splicing. Alternative splicing allows for the expression of different possible mRNA variants from a single pre-mRNA. By mixing and matching different exons, cells can diversify the protein amino acid sequences and its functions to better adapt to the intrinsic or external micro-environmental change [1,2]. Alternative splicing plays important roles in cellular differentiation and stress response in both physiological and pathological conditions. Alternative splicing has been a subject for disease association and for therapeutics. About 88% of human genes are alternatively spliced , it has been reported that 22% of disease causing mutations are splicing sensitive , and 25% of disease-causing exonic mutations induce exon skipping .
Neurodegenerative diseases are a class of diseases characterized by neuronal death and/or dysfunction [6,7,8,9], such as Alzheimer’s disease, Parkinson’s disease, Huntington’s disease, and ALS. So far, therapies for most of these diseases are limited. With an aging population, these diseases are predicted to have a large socioeconomic impact in the near future . Developing therapies for these diseases is paramount. In past decades, efforts to explore the mechanisms of these diseases were mainly focused on mutated proteins. Recently, RNA dysregulation in these conditions was discovered to be an important contributor to pathogenesis. Mechanistic understanding of dysregulation of RNA processing may reveal novel targets and provide new insights for neuroprotective therapy.
Here, we present several examples of splice variants conferring differential neuroprotection. In this review, we describe the role of splicing in modulating the neuroprotective capabilities of 5 genes- Nicotinamide Mononucleotide Adenylyltransferase (NMNAT), Cluster of Differentiation 33 (CD33), Receptor for Advanced Glycation End-products (RAGE), X-Box Binding Protein-1 (XBP-1), and Mechano-Growth Factor (MGF). All of these genes have been demonstrated to protect against neurodegenerative diseases in a robust, splicing-dependent manner. NMNAT is a conserved enzyme whose neuroprotection has been demonstrated in a variety of disease models in many species. We describe how Drosophila Nmnat pre-mRNA splicing is determined by a microRNA disrupting its secondary structure in order to upregulate the more neuroprotective NMNAT variant. A CD33 variant which skips an exon has been linked to reduced risk of Late-Onset Alzheimer’s disease. The soluble isoform of RAGE is produced via an alternative 3’ splice site, and results in decreased Amyloid beta (Aβ) uptake in Alzheimer’s. XBP-1 (X Box binding protein 1) pre-mRNA is normally localized to the endoplasmic reticulum. During stress conditions, it is spliced and translated to its active form, a transcription factor which can activate pro-neuroprotective targets. MGF is a variant of Insulin-like Growth factor which results from a frame shift coupled to the inclusion of an exon. This variant has demonstrated protection in many models for neurodegenerative diseases, such as Amyotrophic lateral sclerosis (ALS), ischemia, and MPP+ (1-methyl-4-phenylpyridinium) treatment. With there already being reports of developing therapeutics to influence splice variants [11,12], these genes present excellent opportunities to combat neurodegenerative diseases.
2. Mutually Exclusive Last Exons-NMNAT
Nicotinamide mononucleotide adenylyltransferase (NMNAT) is a housekeeping enzyme that is ubiquitous across the biosphere. It is the sole enzyme responsible for the synthesis of nicotinamide adenine dinucleotide (NAD+) from Nicotinamide mononucleotide (NMN) in all living organisms . Its highly conserved and essential nature makes it a central player in many processes throughout the biosphere.
In addition to its enzymatic role, NMNAT proteins are essential for neuronal maintenance and protection against neurodegeneration [12,13,14,15,16,17,18,19,20,21,22,23,24]. Specifically in models of proteinopathies, NMNAT has been found to function as a chaperone , and protect against neurodegeneration through direct interaction with disease-associated proteins, including Ataxin-1, Tau [15,16] and Huntingtin . NMNAT was able to protect neurons even when enzyme deactivated through mutation, showing the importance of its chaperone functions in neuroprotection . NMNAT has also been shown to confer robust resistance against various stressors across many species, including hypoxia [19,20], heat , oxidative stress [21,22], disease states [14,15,16,23], and aging . Indeed, NMNAT proteins can serve as a general protector to improve cellular viability.
Drosophila melanogaster has a single Nmnat gene  which is alternatively spliced into two distinct mRNA variants, RA and RB, giving rise to protein isoforms NMNATPC and NMNATPD, respectively .While NMNAT has an alternate distal start codon which can translate to two additional protein isoforms, NMNATPA and NMNATPB, the proximal start site is strongly preferred. Isoforms NMNATPC and NMNATPD share similar enzymatic properties but have distinct subcellular localizations and divergent neuroprotective functions; isoform NMNATPD is cytosolic and is a better neuroprotector than the RA-translated nuclear NMNATPC isoform . NMNATPD has been shown to protect against spinocerebellar ataxia-1, while NMNATPC exacerbated it .
The divergent function of NMNATPC and NMNATPD protein isoforms posts an intriguing question regarding the regulation of isoform-specific expression. Drosophila NMNAT pre-mRNA has 7 exons  (Figure 1). The first 4 exons are commonly spliced to the two RNA variants, RA and RB. While NMNAT pre-mRNA is slightly preferentially spliced to variant RA during basal conditions, it has been shown that the splicing of NMNAT pre-mRNA is shifted to variant RB in response to stress. A heat shock response element has been identified in the promoter of Drosophila Nmnat, allowing transcriptional upregulation of NMNAT pre-mRNA during stress conditions by transcription factor Heat Shock Factor (HSF) . This is significant as it allows for the upregulation of a stress resistance factor in response to stress. However, this only accounts for the upregulation of NMNAT pre-mRNA, and doesn’t explain the variant specific stress response. While NMNAT pre-mRNA transcription is upregulated in response to stress, only NMNAT splice variant RB is increased in stress conditions. Thus, a post-transcriptional “switch” is activated to promote the splicing of NMNAT pre-mRNA to RB and to serve as an effective homeostasis strategy to increase the production of the more protective protein NMNATPD isoform under stress .
Key sequences regulating splicing are present in the 4th intron and 5th exon, termed Box 1 (Cyan in Figure 1) and Box 2 (Blue), respectively . When these two complementary sequences bind, they form a stem-loop structure. This brings the 3’ splice site of exon 6 closer to exon 4, allowing for the splicing to RA (On bottom, with green exons 6 and 7). When the stem-loop doesn’t form, the 4th exon is preferentially spliced into the 3’ SS of the 5th exon (Light red), producing RB. We recently identified a direct role of microRNA miR-1002 in regulating alternative splicing . Specifically, miR-1002 binds to a sequence in the pre-mRNA of NMNAT which overlaps with Box 2 and prevents the formation of the stem-loop from Box 1 and Box 2, and promotes splicing towards the RB variant. Importantly, both NMNAT pre-mRNA and miR-1002 transcription is upregulated under stress. This increases the production of the more neuroprotective NMNATPD protein isoform and confers stress resistance . Such microRNA-mediated regulation of alternative splicing increases the repertoire of transcriptional regulation and allow a rapid response to stress.
Figure 1 Stress can induce splicing-mediated neuroprotection for NMNAT. NMNAT pre-mRNA can be alternatively spliced to the RA or RB variants. This is mediated by the presence or absence of a pre-mRNA stem-loop structure which facilitates the exclusion of the RB-exclusive 5th exon. In stress conditions, miR-1002 binds to complementary sequences in the pre-mRNA and prevents the formation of the stem-loop structure. This pushes alternative splicing towards RB, which translates to the more neuroprotective PD protein isoform.
It remains to be seen how prevalent this mechanism is. While this is the only known example of a microRNA directly regulating mRNA splicing, there is ample opportunity for therapeutic development. It has already been shown that dsRNAs can be utilized to correct the splicing of a disease-causing transcript, SMN2 . Furthermore, the first FDA approved drug for Spinal Muscular Atrophy (SMA) is Antisense Oligonucleotides which target SMN2 splicing [28,29,30]. Using small oligonucleotides to correct aberrant splicing is an attractive avenue for further research.
3. Skipping a LOAD: CD33 and Exon Skipping
CD33, or Siglec-3, is a cell surface receptor that is part of the Siglecs family of type I transmembrane immunoglobulin-like lectins that bind sialic acids . Primarily expressed by monocytes, hematopoietic cells, and microglia, it is an immunomodulator which can bind sialic acid via an extracellular N-terminal V-set immunoglobulin domain [32,33,34]. CD33 pre-mRNA has 7 exons, of which the 2nd exon encodes for the extracellular IG V-set domain  (Figure 2).
Figure 2 Two SNPs result in differential splicing of CD33. CD33’s seven exons can be spliced to the full CD33M with all seven exons, whose protein forms a dimer on the cell surface. When the second exon is spliced out, the resulting CD33m protein remains a monomer and protects against LOAD. Two SNPs in the 2nd exon (rs12459419t and rs12459419c) affect the splicing of CD33 pre-mRNA differently, with the latter allowing PTBP1 binding to include the 2nd exon. These SNPs were discovered when they were found to be in linkage disequilibrium with two SNPs in the promoter region, with rs12459419t being associated with rs3865444a and rs12459419c with rs3865444c. The original GWAS study linked rs3865444a with lower rates of LOAD compared to rs3865444c.
CD33’s role in Late-onset Alzheimer’s disease (LOAD) first came to prominence as a result of 2 GWAS studies [36,37]. These studies identified a SNP in the proximal promoter of CD33, rs3865444, as a locus associated with LOAD. While rs3865444C is associated with a higher risk of LOAD, rs3865444A is protective. Later, it was discovered that rs3865444 is in complete linkage disequilibrium with rs12459419, another SNP in the 2nd exon of CD33 . Further investigation lead to the discovery that this SNP affects the splicing of CD33, which in turn affects its neuroprotective efficacy [35,38,39,40]
The SNP rs12459419C in the 4th base of exon 2, which is linked to rs3865444C, promotes exon 2 inclusion and splicing of the CD33M variant. rs12459419T, which is linked to rs3865444A and is associated with LOAD protection, promotes exon 2 exclusion and splicing of the CD33m variant . The exclusion of the 2nd exon is likely facilitated by the inhibition of Polypyrimidine tract binding protein 1 (PTBP1) binding due to the SNP .
The exclusion of the 2nd exon and its encoded IG-V domain results in an intracellular isoform of CD33 . This is likely due to the loss of a disulfide bond involving the V-set domain, which is important for CD33 dimer formation. Lack of this CD33 dimer leads to an inability to mobilize to the cell surface and creates an intracellular pool of CD33m. This intracellular pool facilitates the activation of TREM2 in microglia, which in turn activates microglia for Aβ clearance .
The increased amount of CD33 on the cell surface is associated with AD pathology . In fact, deletion of CD33 in mice has been proven to be protective . The minor allele CD33m has been shown to inhibit the uptake of Aβ by microglia .
CD33 has been considered as a target for therapies, including CRISPR/cas9 deletion of the 2nd exon , antibody-drug conjugate gemtuzumab ozogamicin , and CD33/CD3-bispecific BiTE antibody construct . The CRISPR/cas9 deletion showed efficient excision of the second exon and engraftment of knockout hematopoetic stem cells into mice, and the latter two antibody-based drugs showed efficacy against acute myeloid leukemia. These results demonstrate that CD33 modulation is feasible, and a potential pathway to neuroprotection.
4. Warrior’s RAGE: Alternative 3’ Splice Site of RAGE
Receptor for Advanced Glycation End-products (RAGE) is a multi-ligand receptor that is a part of the immunoglobulin superfamily and is implicated in Aβ uptake in Alzheimer’s disease . RAGE is expressed in many cell types including macrophages, muscle cells, Purkinje cells, astrocytes, and hippocampal neurons [49,50,51,52]. Its protein expression has been reported to be increased in the brains and microglia of patients with AD [49,50,51]. RAGE can activate APP cleavage via activation of Nuclear factor of activated T cells-1 (NFAT1)  or through the p38-MAPK and GSK3β pathway . RAGE is also implicated in inflammation via microglia-mediated stress response . RAGE has been shown to mediate the expression of proinflammatory cytokines at the , and its expression in microglia increases production of IL-1β and TNF-α in AD-model mice . Treatment of a mouse model of AD with RAGE-specific inhibitor FPS-ZM1 prevented the influx of Aβ into the brain . Consistently, overexpression of RAGE exacerbated cognitive decline in AD-model mice . In addition, inhibition of RAGE in microglia prevented oxygen/glucose deprivation-induced synaptic dysfunction .
RAGE pre-mRNA has 11 exons, giving rise to a possible 13 variants through alternative splicing  (Figure 3). Of particular interest is endogenous secretory RAGE (esRAGE or RAGE_v1) and membrane-bound RAGE (mRAGE). esRAGE is a shorter, secretary form of RAGE, formed through the exclusion of exon 10 and inclusion of a portion of intron 9, mediated by an alternative 3’ splice site in the 9th intron, which results in an exclusion of the transmembrane domain . esRAGE acts as a decoy receptor for mRAGE, competitively binding to ligands and attenuating cellular toxicity. This soluble form of RAGE has been shown to be reduced in the plasma of patients with AD, or ischemic stroke patients with dementia, schizophrenia, and MCI (Mild cognitive impairment) [62,63,64,65,66,67,68]. esRAGE has been shown to be protective relative to mRAGE in Alzheimer’s disease. This protection has been attributed to decreased uptake of glycated Aβ and tau at the BBB [69,70].
Figure 3 A retained intron removed the transmembrane domain of RAGE, producing the soluble esRAGE. RAGE pre-mRNA contains 11 exons, with the 10th exon encoding a TMD. hnRNP binding to the pre-mRNA promotes splicing towards the inclusion of all 11 exons in the mature transcript. This produces the membrane bound mRAGE due to the presence of the TMD. Tra2β-1 binding to the pre-mRNA induces the retention of a part of intron 9 and the skipping of exon 10. The resulting protein, esRAGE, lacks a TMD and is neuroprotective.
esRAGE/mRAGE splicing is mediated by Tra2β-1 and hnRNP . G-rich elements in exon 9B are bound by hnRNP H/A1, promoting the splicing of the upstream 5’ splice site, and production of mRAGE . On the other hand, Tra2β-1 upregulates the production of esRAGE . Both Tra2β-1 and hnRNP A1 dysfunction has been reported for Alzheimer’s disease patients [73,74].
Disease modifying drugs directed at multiple sclerosis have been shown to increase esRAGE serum levels in MS patients . Pioglitazone has been shown to increase circulating esRAGe in type 2 diabetic patients , while insulin has been shown to increase esRAGE in vitro . Further work with these therapeutics may prove to be beneficial in the fight against neurodegenerative diseases.
5. Splicing itself as Signal-XBP-1
X-Box Binding protein-1 (XBP-1) is a leucine zipper transcription factor involved in the Unfolded Protein Response (UPR) stress response. XBP-1 exists in 2 forms, XBP1u (unspliced) and XBP1s (spliced). In contrast to other transcripts described in this review, XBP-1 is activated through splicing itself (Figure 4). XBP1 pre-mRNA is localized to the ER in basal conditions. In response to various stresses, XBP-1 is spliced to mRNA and translated into active form XBP-1s. XBP-1s translocates to the nucleus to activate many stress response genes [78,79,80,81,82]. Almost all XBP-1 activation pathways converge onto IRE1α. When various signals reach the ER, Binding immunoglobulin protein (BiP) dissociates from IRE1α [83,84]. IRE1α then dimerizes and autophosphorylates to activate itself [85,86,87,88,89]. This results in IRE1α unconventionally splicing the ER-localized XBP-1 transcript [90,91]. The spliced transcript is then translated before translocation of the active XBP-1 protein to the nucleus.
Figure 4 Stress induces the IRE1α-mediated splicing of XBP-1 mRNA. Unspliced XBP-1 mRNA is localized to the ER during basal conditions. IRE1α is activated by stress, and induces the unconventional splicing of XBP-1 mRNA to its fully processed form. This leads to the translation of XBP-1 to its active protein, which is a transcription factor that translocated to the nucleus and activates many neuroprotective genes. When unspliced XBP-1 is translated, the resulting protein is quickly degraded.
Under normal conditions, XBP-1 transcript is unspliced, and the translated product from unspliced transcript is rapidly degraded . Thus, only the fully spliced form can produce functional protein. A removal of a 26-nucleotide intron from XBP1u by IRE1α is required to induce a frameshift that will produce the functional XBP1s spliced variant . This intron removal is not carried out through conventional spliceosome-mediated splicing, but through unconventional splicing [83,84]. Specifically, IRE1α cleaves XBP1u at 2 specific positions at 2 separate stem-loop structures. This removes the intron before phosphorylation of the 5’ end of the 5th exon, then ligation forms the final XBP1s product. It is important to note that the unconventional splicing of XBP-1 has also been observed to occur in the nucleus in an ER-stress-independent manner .
XBP-1 translocation to the nucleus has many roles in gene activation. XBP-1 can regulate memory formation through Brain-derived neurotrophic factor (BDNF) and kalirin-7 [95,96]. It has also been found to be protective in oxygen/glucose deprivation , α-syn-induced neurodegeneration , 6-hydroxydopamine (6-OHDA) , MPP+ and MPTP induced Parkinson’s models , mutant Huntingtin’s inclusions , stroke , and in the Retinal Ganglion Cells of Experimental autoimmune encephalomyelitis (EAE) mouse Multiple Sclerosis model . It is likely that many of XBP-1’s protective qualities are due to its decreasing proteotoxic load by activating autophagy and lysosomes . Furthermore, XBP-1 is likely involved in contextual memory formation [95,96,105] and axonal guidance ,
However, XBP-1 is double-edged sword. There is evidence suggesting that multiple myeloma is sensitized by knockdown of XBP-1 . Similarly, XBP-1 knockdown sensitized glioma cells to Reactive Oxygen Species (ROS) induced death . Contradictory to other reports, ablation of XBP-1 decreased mutant Huntingtin aggregation , most likely due to the increase of another transcription factor, FoxO1. Mice with mutated Superoxide dismutase 1 (SOD-1) to model ALS had decreased toxicity when XBP-1 was deleted in the nervous system .
Due to its central role in UPR, XBP-1 has many triggers (Table 1). While many hurdles still remain, this provides hope that its splicing can be regulated in a medically feasible manner with further study.
6. MGF - Exon Inclusion + Frameshift
Mechano-Growth Factor (MGF) is a splice variant of Insulin-like Growth Factor-1 (IGF-1). It is so named due to its upregulation in muscle during mechanical loading . IGF-1 pre-mRNA has 6 exons and can produce 3 splice variants in humans and 2 in rodents (Figure 5). During IGF-1 splicing, a 49 bp insertion of the 5th exon (52 bp in rodents) causes a frame shift, resulting in MGF . The splicing of IGF-1 to MGF is mediated by a purine-rich splicing enhancer in exon 5 . SF2/ASF binds to this 18-nucleotide sequence in the pre-mRNA and increases the inclusion of the 5th exon. A series of deletion mutants identified this sequence as necessary for SF2/ASF binding to the transcript in vitro, and increased the splicing inclusion of exon 5 by almost 6 fold. What mediated the splicing of the alternative 3’ splice site of the 5th exon to the 6th exon is yet unknown.
Figure 5 IGF-1 pre-mRNA produces three splice variants in humans and two variants in mouse. The 6th exons in the pre-mRNA can be spliced differentially to produce proteins with different E peptides, while the mature IGF-1 peptide and single peptide remain the same. IGF-1Ea is produced from the skipping of the 5th exon. Skipping of the 6th exon results in human IGF-1Eb. An alternate 3’ splice site in the 5th exon produces the human IGF-1Ec or mouse IGF-1Eb variant. The resulting E peptide is also known as MGF.
It should be noted here that the nomenclature regarding IGF-1 and MGF has been a topic of debate . Humans have 3 IGF-1 splice variants- IGF-1Ea, IGF-1Eb, IGF-1Ec. Rodents have 2 IGF-1 splice variants- IGF-1Ea and IGF-1Eb [126,127]. Human IGF-1Ec mRNA is referred to as MGF and is homologous to rodent IGF-1Eb. All variants most likely use 2 alternative leader sequences in the 1st exon . The first 2 exons are mutually exclusive, with variants containing exon 1 are termed class 1 transcripts and those containing exon 2 are termed class 2 transcripts. When translated all IGF-1 isoforms are cleaved into 3 products: a signal peptide, the mature IGF-1 peptide, and an E peptide. The differences in the splice variants are due to the sequence encoding E peptide, the alternatively spliced 5th and 6th exons. When Human IGF-1Ec/Rodent IGF-1Eb is translated, its resulting E peptide is referred to as MGF as well.
Both the full-length MGF isoform and the E peptide have been shown to provide protection. MGF protects neurons after facial nerve avulsion in rats significantly better than the IGF-IEa . This is most likely due to the MGF E-peptide activating a different set of receptors than the other E peptide variants. For example, it has been shown that MGF works through a different receptor than the other IGF-1 isoforms and doesn’t activate Akt [130,131,132,133,134]. The MGF C-terminal peptide has been shown to induce heme oxygenase-1 (HO-1) . Injection of MGF into the hindlimbs of SOD1G93A mice, a model for ALS, improved muscle strength and slowed neurodegeneration . Injection of the C-terminal peptide of MGF prevented neurodegeneration in the hippocampus after ischemia in gerbils . MGF has been shown to promote neurogenesis as well . Overexpression of MGF in mice starting at various timepoints induced increased growth in the dentate gyrus and subventricular zone, up to 3 months after birth. The C-terminal peptide has been shown to protect SH-SY5Y cells from 6-hydroxydopamine (6-OHDA), 1-methyl-4-phenylpyridinium (MPP+), or rotenone treatment . It has also been shown to protect rats from 6-OHDA-lesion induced damage .
MGF is expressed in neurons during development . In addition to mechanical stress [123,140] and mechanical damage [130,141], MGF expression is induced by hypoxia . Growth hormone (GH) has been shown to increase MGF expression in C2C12 cells , rat muscles , mouse muscle , and elderly humans . GH mostly works through the JAK/Stat pathway to induce GH expression. GH induces the activity of stat5b to bind to a sequence in the 2nd exon of IGF-1, termed HS7 [146,147,148]. Cyclic stretching upregulates the expression of SRSF1, which in turn regulates the expression of MGF in osteoblasts . Other reported inducers of MGF expression are cAMP, Phorbol ester (PMA), and PGE2 .
Due to its attractiveness as a therapeutic target, compelling in vivo groundwork has been laid for MGF modulation. The MGF E peptide can promote the healing of rat tendons  and protect rat brains against traumatic injury . Simulated weightlessness was able to increase MGF mRNA in rat hippocampus , and magnesium alloy may provide a convenient delivery vehicle for MGF . Indeed, MGF has an exciting future and is poised to be a major player in neuroprotection in the years to come.
Neurons are terminally differentiated cells. Regulation of gene expression is critical to maintaining neuronal function against stress. Post-transcriptional steps, including alternative splicing, mRNA stability and localization, translation, and protein modification, stability and localization are emerging as essential targets for regulating neuronal stress response. Among them, the molecular mechanism of alternative splicing is least studied. A number of diversified cis- and trans-elements mediating alternative splicing in the nervous system have been identified. While the identity of the cis-elements is still elusive, most of the trans-elements are RNA binding proteins with the exception of the most recent identification of a microRNA as a trans-element. It will be exciting to uncover the details of how these cis- and trans-elements cooperate to promote or inhibit alternative splicing site selection, and similarly for the characterization of the induction and the initiation of the assembly of the alternative splicing complex. The outcome of these studies will provide new targets for increasing aging and neurodegeneration disease therapy.
This research was supported in part by the National Institutes of Health (NIH) R01NS109640 and R61AT010408 (to R.G.Z.).
Conceptualization: J.P. and R.G.Z.
Funding acquisition: R.G.Z.
Manuscript drafting and editing: J.P., X.T., and R.G.Z.
The authors have declared that no competing interests exist.
- Chaudhary S, Khokhar W, Jabre I, Reddy ASN, Byrne LJ, Wilson CM, et al. Alternative splicing and protein diversity: Plants versus animals. Front Plant Sci. 2019; 10: 708. [CrossRef]
- Kelemen O, Convertini P, Zhang Z, Wen Y, Shen M, Falaleeva M, et al. Function of alternative splicing. Gene. 2013; 514: 1-30. [CrossRef]
- Chen L, Bush SJ, Tovar-Corona JM, Castillo-Morales A, Urrutia AO. Correcting for differential transcript coverage reveals a strong relationship between alternative splicing and organism complexity. Mol Biol Evol. 2014; 31: 1402-1413. [CrossRef]
- Lim KH, Ferraris L, Filloux ME, Raphael BJ, Fairbrother WG. Using positional distribution to identify splicing elements and predict pre-mRNA processing defects in human genes. Proc Natl Acad Sci USA. 2011; 108: 11093-11098. [CrossRef]
- Sterne-Weiler T, Howard J, Mort M, Cooper DN, Sanford JR. Loss of exon identity is a common mechanism of human inherited disease. Genome Res. 2011; 21: 1563-1571. [CrossRef]
- Saxena S, Caroni P. Selective neuronal vulnerability in neurodegenerative diseases: From stressor thresholds to degeneration. Neuron. 2011; 71: 35-48. [CrossRef]
- Tian Y, Meng L, Zhang Z. What is strain in neurodegenerative diseases? Cell Mol Life Sci. 2020; 77: 665-676. [CrossRef]
- Kovacs GG. Molecular pathology of neurodegenerative diseases: Principles and practice. J Clin Pathol. 2019; 72: 725-735. [CrossRef]
- Cha SJ, Do HA, Choi HJ, Lee M, Kim K. The drosophila model: Exploring novel therapeutic compounds against neurodegenerative diseases. Antioxidants (Basel). 2019; 8: 12. [CrossRef]
- Dobson CM. The Amyloid Phenomenon and Its Links with Human Disease. Cold Spring Harb Perspect Biol. 2017; 9: 6. [CrossRef]
- Liu J, Hu J, Corey DR. Expanding the action of duplex RNAs into the nucleus: Redirecting alternative splicing. Nucleic Acids Res. 2012; 40: 1240-1250. [CrossRef]
- Liu J, Hu J, Hicks JA, Prakash TP, Corey DR. Modulation of splicing by single-stranded silencing RNAs. Nucleic Acid Ther. 2015; 25: 113-120. [CrossRef]
- Zhai RG, Rizzi M, Garavaglia S. Nicotinamide/nicotinic acid mononucleotide adenylyltransferase, new insights into an ancient enzyme. Cell Mol Life Sci. 2009; 66: 2805-2818. [CrossRef]
- Zhai RG, Zhang F, Hiesinger PR, Cao Y, Haueter CM, Bellen HJ. NAD synthase NMNAT acts as a chaperone to protect against neurodegeneration. Nature. 2008; 452: 887-891. [CrossRef]
- Ali YO, Ruan K, Zhai RG. NMNAT suppresses tau-induced neurodegeneration by promoting clearance of hyperphosphorylated tau oligomers in a Drosophila model of tauopathy. Hum Mol Genet. 2012; 21: 237-250. [CrossRef]
- Rossi F, Geiszler PC, Meng W, Barron MR, Prior M, Herd-Smith A, et al. NAD-biosynthetic enzyme NMNAT1 reduces early behavioral impairment in the htau mouse model of tauopathy. Behav Brain Res. 2018; 339: 140-152. [CrossRef]
- Zhu Y, Li C, Tao X, Brazill JM, Park J, Diaz-Perez Z, et al. Nmnat restores neuronal integrity by neutralizing mutant Huntingtin aggregate-induced progressive toxicity. PNAS. 2019; 116: 19165-19175. [CrossRef]
- Zhai RG, Cao Y, Hiesinger PR, Zhou Y, Mehta SQ, Schulze KL, et al. Drosophila NMNAT maintains neural integrity independent of its NAD synthesis activity. PLoS Biol. 2006; 4: e416. [CrossRef]
- Ali YO, McCormack R, Darr A, Zhai RG. Nicotinamide mononucleotide adenylyltransferase is a stress response protein regulated by the heat shock factor/hypoxia-inducible factor 1alpha pathway. J Biol Chem. 2011; 286: 19089-19099. [CrossRef]
- Wen Y, Zhai RG, Kim MD. The role of autophagy in Nmnat-mediated protection against hypoxia-induced dendrite degeneration. Mol Cell Neurosci. 2013; 52: 140-151. [CrossRef]
- Chiurchiù V, Orlacchio A, Maccarrone M. Is Modulation of oxidative stress an answer? The state of the art of redox therapeutic actions in neurodegenerative diseases. Oxid Med Cell Longev. 2016; 2016: 7909380. [CrossRef]
- Cobley JN, Fiorello ML, Bailey DM. 13 reasons why the brain is susceptible to oxidative stress. Redox Biol. 2018; 15: 490-503. [CrossRef]
- Ruan K, Zhu Y, Li C, Brazill JM, Zhai RG. Alternative splicing of Drosophila Nmnat functions as a switch to enhance neuroprotection under stress. Nat Commun. 2015; 6: 10057. [CrossRef]
- Liu X, Xiang Z, Li Q, Ruan X, Xiong K, Dengtai W, et al. Overexpression of Nmnat improves the adaption of health span in aging Drosophila. Exp Gerontol. 2018; 108: 276-283. [CrossRef]
- Ali YO, Li-Kroeger D, Bellen HJ, Zhai RG, Lu HC. NMNATs, evolutionarily conserved neuronal maintenance factors. Trends Neurosci. 2013; 36: 632-640. [CrossRef]
- Raker VA, Mironov AA, Gelfand MS, Pervouchine DD. Modulation of alternative splicing by long-range RNA structures in Drosophila. Nucleic Acids Res. 2009; 37: 4533-4544. [CrossRef]
- Park J, Zhu Y, Tao X, Brazill JM, Li C, Wuchty S, et al. MicroRNA miR-1002 enhances NMNAT-mediated stress response by modulating alternative splicing. iScience. 2019; 19: 1048-1064. [CrossRef]
- Hua Y, Vickers TA, Okunola HL, Bennett CF, Krainer AR. Antisense masking of an hnRNP A1/A2 intronic splicing silencer corrects SMN2 splicing in transgenic mice. Am J Hum Genet. 2008; 82: 834-848. [CrossRef]
- Mercuri E, Darras BT, Chiriboga CA, Day JW, Campbell C, Connolly AM, et al. Nusinersen versus Sham Control in Later-Onset Spinal Muscular Atrophy. N Engl J Med. 2018; 378: 625-635. [CrossRef]
- Singh NK, Singh NN, Androphy EJ, Singh RN. Splicing of a critical exon of human Survival Motor Neuron is regulated by a unique silencer element located in the last intron. Mol Cell Biol. 2006; 26: 1333-1346. [CrossRef]
- McMillan SJ, Crocker PR. CD33-related sialic-acid-binding immunoglobulin-like lectins in health and disease. Carbohydr Res. 2008; 343: 2050-2056. [CrossRef]
- Simmons D, Seed B. Isolation of a cDNA encoding CD33, a differentiation antigen of myeloid progenitor cells. J Immunol. 1988; 141: 2797-2800.
- Griciuc A, Serrano-Pozo A, Parrado AR, Lesinski AN, Asselin CN, Mullin K, et al. Alzheimer’s disease risk gene CD33 inhibits microglial uptake of amyloid beta. Neuron. 2013; 78: 631-643. [CrossRef]
- Bradshaw EM, Chibnik LB, Keenan BT, Ottoboni L, Raj T, Tang A, et al. CD33 Alzheimer’s disease locus: Altered monocyte function and amyloid biology. Nat Neurosci. 2013; 16: 848-850. [CrossRef]
- Raj T, Ryan KJ, Replogle JM, Chibnik LB, Rosenkrantz L, Tang A, et al. CD33: Increased inclusion of exon 2 implicates the Ig V-set domain in Alzheimer’s disease susceptibility. Hum Mol Genet. 2014; 23: 2729-2736. [CrossRef]
- Hollingworth P, Harold D, Sims R, Gerrish A, Lambert JC, Carrasquillo MM, et al. Common variants at ABCA7, MS4A6A/MS4A4E, EPHA1, CD33 and CD2AP are associated with Alzheimer's disease. Nat Genet. 2011; 43: 429-435. [CrossRef]
- Naj AC, Jun G, Beecham GW, Wang LS, Vardarajan BN, Buros J, et al. Common variants at MS4A4/MS4A6E, CD2AP, CD33 and EPHA1 are associated with late-onset Alzheimer’s disease. Nat Genet. 2011; 43: 436-441. [CrossRef]
- Malik M, Simpson JF, Parikh I, Wilfred BR, Fardo DW, Nelson PT, et al. CD33 Alzheimer’s risk-altering polymorphism, CD33 expression, and exon 2 splicing. J Neurosci. 2013; 33: 13320-13325. [CrossRef]
- Walker DG, Whetzel AM, Serrano G, Sue LI, Beach TG, Lue LF. Association of CD33 polymorphism rs3865444 with Alzheimer’s disease pathology and CD33 expression in human cerebral cortex. Neurobiol Aging. 2015; 36: 571-582. [CrossRef]
- Malik M, Chiles J, Xi HS, Medway C, Simpson J, Potluri S, et al. Genetics of CD33 in Alzheimer’s disease and acute myeloid leukemia. Hum Mol Genet. 2015; 24: 3557-3570. [CrossRef]
- Pérez-Oliva AB, Martínez-Esparza M, Vicente-Fernández JJ, Corral-San Miguel R, García-Peñarrubia P, Hernández-Caselles T. Epitope mapping, expression and post-translational modifications of two isoforms of CD33 (CD33M and CD33m) on lymphoid and myeloid human cells. Glycobiology. 2011; 21: 757-770. [CrossRef]
- van Bergeijk P, Seneviratne U, Aparicio-Prat E, Stanton R, Hasson SA. SRSF1 and PTBP1 are trans-acting factors that suppress the formation of a CD33 splicing isoform linked to Alzheimer’s disease risk. Mol Cell Biol. 2019; 39: 18. [CrossRef]
- Siddiqui SS, Springer SA, Verhagen A, Sundaramurthy V, Alisson-Silva F, Jiang W, et al. The Alzheimer’s disease-protective CD33 splice variant mediates adaptive loss of function via diversion to an intracellular pool. J Biol Chem. 2017; 292: 15312-15320. [CrossRef]
- Griciuc A, Patel S, Federico AN, Choi SH, Innes BJ, Oram MK, et al. TREM2 acts downstream of CD33 in modulating microglial pathology in Alzheimer’s disease. Neuron. 2019; 103: 820-835.e7. [CrossRef]
- Humbert O, Laszlo GS, Sichel S, Ironside C, Haworth KG, Bates OM, et al. Engineering resistance to CD33-targeted immunotherapy in normal hematopoiesis by CRISPR/Cas9-deletion of CD33 exon 2. Leukemia. 2019; 33: 762-808. [CrossRef]
- Lamba JK, Chauhan L, Shin M, Loken MR, Pollard JA, Wang YC, et al. CD33 Splicing polymorphism determines gemtuzumab ozogamicin response in de novo acute myeloid leukemia: Report from randomized phase iii children’s oncology group trial AAML0531. J Clin Oncol. 2017; 35: 2674-2682. [CrossRef]
- Jitschin R, Saul D, Braun M, Tohumeken S, Völkl S, Kischel R, et al. CD33/CD3-bispecific T-cell engaging (BiTE®) antibody construct targets monocytic AML myeloid-derived suppressor cells. J Immunother Cancer. 2018; 6: 116. [CrossRef]
- Chaney MO, Stine WB, Kokjohn TA, Kuo YM, Esh C, Rahman A, et al. RAGE and amyloid beta interactions: Atomic force microscopy and molecular modeling. Biochim Biophys Acta. 2005; 1741: 199-205. [CrossRef]
- Lue LF, Walker DG, Brachova L, Beach TG, Rogers J, Schmidt AM, et al. Involvement of microglial receptor for advanced glycation endproducts (RAGE) in Alzheimer’s disease: Identification of a cellular activation mechanism. Exp Neurol. 2001; 171: 29-45. [CrossRef]
- Yan SD, Chen X, Fu J, Chen M, Zhu H, Roher A, et al. RAGE and amyloid-beta peptide neurotoxicity in Alzheimer’s disease. Nature. 1996; 382: 685-691. [CrossRef]
- Leclerc E, Sturchler E, Vetter SW. The S100B/RAGE axis in Alzheimer’s disease. Cardiovasc Psychiatry Neurol. 2010; 2010: 539581. [CrossRef]
- Chou DKH, Zhang J, Smith FI, McCaffery P, Jungalwala FB. Developmental expression of receptor for advanced glycation end products (RAGE), amphoterin and sulfoglucuronyl (HNK-1) carbohydrate in mouse cerebellum and their role in neurite outgrowth and cell migration. J Neurochem. 2004; 90: 1389-1401. [CrossRef]
- Cho HJ, Son SM, Jin SM, Hong HS, Shin DH, Kim SJ, et al. RAGE regulates BACE1 and Abeta generation via NFAT1 activation in Alzheimer’s disease animal model. FASEB J. 2009; 23: 2639-2649. [CrossRef]
- Fang F, Yu Q, Arancio O, Chen D, Gore SS, Yan SS, et al. RAGE mediates Aβ accumulation in a mouse model of Alzheimer’s disease via modulation of β- and γ-secretase activity. Hum Mol Genet. 2018; 27: 1002-1014. [CrossRef]
- Du Yan S, Zhu H, Fu J, Yan SF, Roher A, Tourtellotte WW, et al. Amyloid-beta peptide-receptor for advanced glycation endproduct interaction elicits neuronal expression of macrophage-colony stimulating factor: A proinflammatory pathway in Alzheimer disease. Proc Natl Acad Sci USA. 1997; 94: 5296-5301. [CrossRef]
- Fang F, Lue LF, Yan S, Xu H, Luddy JS, Chen D, et al. RAGE-dependent signaling in microglia contributes to neuroinflammation, Abeta accumulation, and impaired learning/memory in a mouse model of Alzheimer’s disease. FASEB J. 2010; 24: 1043-1055. [CrossRef]
- Deane R, Singh I, Sagare AP, Bell RD, Ross NT, LaRue B, et al. A multimodal RAGE-specific inhibitor reduces amyloid β-mediated brain disorder in a mouse model of Alzheimer disease. J Clin Invest. 2012; 122: 1377-1392. [CrossRef]
- Arancio O, Zhang HP, Chen X, Lin C, Trinchese F, Puzzo D, et al. RAGE potentiates Abeta-induced perturbation of neuronal function in transgenic mice. EMBO J. 2004; 23: 4096-4105. [CrossRef]
- Origlia N, Criscuolo C, Arancio O, Yan SS, Domenici L. RAGE inhibition in microglia prevents ischemia-dependent synaptic dysfunction in an amyloid-enriched environment. J Neurosci. 2014; 34: 8749-8760. [CrossRef]
- Hudson BI, Carter AM, Harja E, Kalea AZ, Arriero M, Yang H, et al. Identification, classification, and expression of RAGE gene splice variants. FASEB J. 2008; 22: 1572-1580. [CrossRef]
- Kalea AZ, Schmidt AM, Hudson BI. Alternative splicing of RAGE: Roles in biology and disease. Front Biosci (Landmark Ed). 2011; 16: 2756-2770. [CrossRef]
- Hernanz A, De la Fuente M, Navarro M, Frank A. Plasma aminothiol compounds, but not serum tumor necrosis factor receptor II and soluble receptor for advanced glycation end products, are related to the cognitive impairment in Alzheimer’s disease and mild cognitive impairment patients. Neuroimmunomodulation. 2007; 14: 163-167. [CrossRef]
- Ghidoni R, Benussi L, Glionna M, Franzoni M, Geroldi D, Emanuele E, et al. Decreased plasma levels of soluble receptor for advanced glycation end products in mild cognitive impairment. J Neural Transm (Vienna). 2008; 115: 1047-1050. [CrossRef]
- Emanuele E, D’Angelo A, Tomaino C, Binetti G, Ghidoni R, Politi P, et al. Circulating levels of soluble receptor for advanced glycation end products in Alzheimer disease and vascular dementia. Arch Neurol. 2005; 62: 1734-1736. [CrossRef]
- Li K, Dai D, Zhao B, Yao L, Yao S, Wang B, et al. Association between the RAGE G82S polymorphism and Alzheimer’s disease. J Neural Transm (Vienna). 2010; 117: 97-104. [CrossRef]
- Tang SC, Yang KC, Hu CJ, Chiou HY, Wu CC, Jeng JS. Elevated plasma level of soluble form of RAGE in ischemic stroke patients with dementia. Neuromolecular Med. 2017; 19: 579-583. [CrossRef]
- Xu XY, Deng CQ, Wang J, Deng XJ, Xiao Q, Li Y, et al. Plasma levels of soluble receptor for advanced glycation end products in Alzheimer’s disease. Int J Neurosci. 2017; 127: 454-458. [CrossRef]
- Miyashita M, Watanabe T, Ichikawa T, Toriumi K, Horiuchi Y, Kobori A, et al. The regulation of soluble receptor for AGEs contributes to carbonyl stress in schizophrenia. Biochem Biophys Res Commun. 2016; 479: 447-452. [CrossRef]
- Sugihara T, Munesue S, Yamamoto Y, Sakurai S, Akhter N, Kitamura Y, et al. Endogenous secretory receptor for advanced glycation end-products inhibits amyloid-β1-42 uptake into mouse brain. J Alzheimers Dis. 2012; 28: 709-720. [CrossRef]
- Deane R, Du Yan S, Submamaryan RK, LaRue B, Jovanovic S, Hogg E, et al. RAGE mediates amyloid-beta peptide transport across the blood-brain barrier and accumulation in brain. Nat Med. 2003; 9: 907-913. [CrossRef]
- Ohe K, Watanabe T, Harada S, Munesue S, Yamamoto Y, Yonekura H, et al. Regulation of alternative splicing of the receptor for advanced glycation endproducts (RAGE) through G-rich cis-elements and heterogenous nuclear ribonucleoprotein H. J Biochem. 2010; 147: 651-659. [CrossRef]
- Liu XY, Li HL, Su JB, Ding FH, Zhao JJ, Chai F, et al. Regulation of RAGE splicing by hnRNP A1 and Tra2β-1 and its potential role in AD pathogenesis. J Neurochem. 2015; 133: 187-198. [CrossRef]
- Glatz DC, Rujescu D, Tang Y, Berendt FJ, Hartmann AM, Faltraco F, et al. The alternative splicing of tau exon 10 and its regulatory proteins CLK2 and TRA2-BETA1 changes in sporadic Alzheimer’s disease. J Neurochem. 2006; 96: 635-644. [CrossRef]
- Villa C, Fenoglio C, De Riz M, Clerici F, Marcone A, Benussi L, et al. Role of hnRNP-A1 and miR-590-3p in neuronal death: Genetics and expression analysis in patients with Alzheimer disease and frontotemporal lobar degeneration. Rejuvenation Res. 2011; 14: 275-281. [CrossRef]
- Sternberg Z, Sternberg D, Drake A, Chichelli T, Yu J, Hojnacki D. Disease modifying drugs modulate endogenous secretory receptor for advanced glycation end-products, a new biomarker of clinical relapse in multiple sclerosis. J Neuroimmunol. 2014; 274: 197-201. [CrossRef]
- Koyama H, Tanaka S, Monden M, Shoji T, Morioka T, Fukumoto S, et al. Comparison of effects of pioglitazone and glimepiride on plasma soluble RAGE and RAGE expression in peripheral mononuclear cells in type 2 diabetes: Randomized controlled trial (PioRAGE). Atherosclerosis. 2014; 234: 329-334. [CrossRef]
- Lam JKY, Wang Y, Shiu SWM, Wong Y, Betteridge DJ, Tan KCB. Effect of insulin on the soluble receptor for advanced glycation end products (RAGE). Diabet Med. 2013; 30: 702-709. [CrossRef]
- Yoshida H, Matsui T, Yamamoto A, Okada T, Mori K. XBP1 mRNA is induced by ATF6 and spliced by IRE1 in response to ER stress to produce a highly active transcription factor. Cell. 2001; 107:881-891. [CrossRef]
- Lee K, Tirasophon W, Shen X, Michalak M, Prywes R, Okada T, et al. IRE1-mediated unconventional mRNA splicing and S2P-mediated ATF6 cleavage merge to regulate XBP1 in signaling the unfolded protein response. Genes Dev. 2002; 16: 452-466. [CrossRef]
- Acosta-Alvear D, Zhou Y, Blais A, Tsikitis M, Lents NH, Arias C, et al. XBP1 controls diverse cell type- and condition-specific transcriptional regulatory networks. Mol Cell. 2007; 27: 53-66. [CrossRef]
- Yamamoto K, Suzuki N, Wada T, Okada T, Yoshida H, Kaufman RJ, et al. Human HRD1 promoter carries a functional unfolded protein response element to which XBP1 but not ATF6 directly binds. J Biochem. 2008; 144: 477-486. [CrossRef]
- Kanemoto S, Kondo S, Ogata M, Murakami T, Urano F, Imaizumi K. XBP1 activates the transcription of its target genes via an ACGT core sequence under ER stress. Biochem Biophys Res Commun. 2005; 331: 1146-1153. [CrossRef]
- Bertolotti A, Zhang Y, Hendershot LM, Harding HP, Ron D. Dynamic interaction of BiP and ER stress transducers in the unfolded-protein response. Nat Cell Biol. 2000; 2: 326-332. [CrossRef]
- Pincus D, Chevalier MW, Aragón T, van Anken E, Vidal SE, El-Samad H, et al. BiP binding to the ER-stress sensor Ire1 tunes the homeostatic behavior of the unfolded protein response. PLoS Biol. 2010; 8: e1000415. [CrossRef]
- Lee KPK, Dey M, Neculai D, Cao C, Dever TE, Sicheri F. Structure of the dual enzyme Ire1 reveals the basis for catalysis and regulation in nonconventional RNA splicing. Cell. 2008; 132: 89-100. [CrossRef]
- Korennykh AV, Egea PF, Korostelev AA, Finer-Moore J, Zhang C, Shokat KM, et al. The unfolded protein response signals through high-order assembly of Ire1. Nature. 2009; 457: 687-693. [CrossRef]
- Kimata Y, Ishiwata-Kimata Y, Ito T, Hirata A, Suzuki T, Oikawa D, et al. Two regulatory steps of ER-stress sensor Ire1 involving its cluster formation and interaction with unfolded proteins. J Cell Biol. 2007; 179: 75-86. [CrossRef]
- Zhou J, Liu CY, Back SH, Clark RL, Peisach D, Xu Z, et al. The crystal structure of human IRE1 luminal domain reveals a conserved dimerization interface required for activation of the unfolded protein response. Proc Natl Acad Sci USA. 2006; 103: 14343-14348. [CrossRef]
- Gardner BM, Walter P. Unfolded proteins are Ire1-activating ligands that directly induce the unfolded protein response. Science. 2011; 333: 1891-1894. [CrossRef]
- Calfon M, Zeng H, Urano F, Till JH, Hubbard SR, Harding HP, et al. IRE1 couples endoplasmic reticulum load to secretory capacity by processing the XBP-1 mRNA. Nature. 2002; 415: 92-96. [CrossRef]
- Tam AB, Koong AC, Niwa M. Ire1 has distinct catalytic mechanisms for XBP1/HAC1 splicing and RIDD. Cell Rep. 2014; 9: 850-858. [CrossRef]
- Tirosh B, Iwakoshi NN, Glimcher LH, Ploegh HL. Rapid turnover of unspliced Xbp-1 as a factor that modulates the unfolded protein response. J Biol Chem. 2006; 281: 5852-5860. [CrossRef]
- Wang Y, Xing P, Cui W, Wang W, Cui Y, Ying G, et al. Acute endoplasmic reticulum stress-independent unconventional splicing of XBP1 mRNA in the nucleus of mammalian cells. Int J Mol Sci. 2015; 16: 13302-13321. [CrossRef]
- Yoshida H. Unconventional splicing of XBP-1 mRNA in the unfolded protein response. Antioxid Redox Signal. 2007; 9: 2323-2333. [CrossRef]
- Martínez G, Vidal RL, Mardones P, Serrano FG, Ardiles AO, Wirth C, et al. Regulation of memory formation by the transcription factor XBP1. Cell Rep. 2016; 14: 1382-1394. [CrossRef]
- Cissé M, Duplan E, Lorivel T, Dunys J, Bauer C, Meckler X, et al. The transcription factor XBP1s restores hippocampal synaptic plasticity and memory by control of the Kalirin-7 pathway in Alzheimer model. Mol Psychiatry. 2017; 22: 1562-1575. [CrossRef]
- Ibuki T, Yamasaki Y, Mizuguchi H, Sokabe M. Protective effects of XBP1 against oxygen and glucose deprivation/reoxygenation injury in rat primary hippocampal neurons. Neurosci Lett. 2012; 518: 45-48. [CrossRef]
- Ray A, Zhang S, Rentas C, Caldwell KA, Caldwell GA. RTCB-1 mediates neuroprotection via XBP-1 mRNA splicing in the unfolded protein response pathway. J Neurosci. 2014; 34: 16076-16085. [CrossRef]
- Valdés P, Mercado G, Vidal RL, Molina C, Parsons G, Court FA, et al. Control of dopaminergic neuron survival by the unfolded protein response transcription factor XBP1. Proc Natl Acad Sci USA. 2014; 111: 6804-6809. [CrossRef]
- Sado M, Yamasaki Y, Iwanaga T, Onaka Y, Ibuki T, Nishihara S, et al. Protective effect against Parkinson’s disease-related insults through the activation of XBP1. Brain Res. 2009; 1257: 16-24. [CrossRef]
- Zuleta A, Vidal RL, Armentano D, Parsons G, Hetz C. AAV-mediated delivery of the transcription factor XBP1s into the striatum reduces mutant Huntingtin aggregation in a mouse model of Huntington’s disease. Biochem Biophys Res Commun. 2012; 420: 558-563. [CrossRef]
- Jiang M, Yu S, Yu Z, Sheng H, Li Y, Liu S, et al. XBP1 (X-Box-Binding Protein-1)-Dependent O-GlcNAcylation is neuroprotective in ischemic stroke in young mice and its impairment in aged mice is rescued by Thiamet-G. Stroke. 2017; 48: 1646-1654. [CrossRef]
- Huang H, Miao L, Liang F, Liu X, Xu L, Teng X, et al. Neuroprotection by eIF2α-CHOP inhibition and XBP-1 activation in EAE/optic neuritiss. Cell Death Dis. 2017; 8: e2936. [CrossRef]
- Imanikia S, Özbey NP, Krueger C, Casanueva MO, Taylor RC. Neuronal XBP-1 activates intestinal lysosomes to improve proteostasis in C. elegans. Curr Biol. 2019; 29: 2322-2338.e7. [CrossRef]
- Cissé M, Duplan E, Checler F. The transcription factor XBP1 in memory and cognition: Implications in Alzheimer’s disease. Mol Med. 2017; 22: 905-917. [CrossRef]
- Asakura T, Ogura K, Goshima Y. IRE-1/XBP-1 pathway of the unfolded protein response is required for properly localizing neuronal UNC-6/Netrin for axon guidance in C. elegans. Genes Cells. 2015; 20: 153-159. [CrossRef]
- Mimura N, Fulciniti M, Gorgun G, Tai YT, Cirstea D, Santo L, et al. Blockade of XBP1 splicing by inhibition of IRE1α is a promising therapeutic option in multiple myeloma. Blood. 2012; 119: 5772-5781. [CrossRef]
- Liu Y, Zhang X, Liang Y, Yu H, Chen X, Zheng T, et al. Targeting X box-binding protein-1 (XBP1) enhances sensitivity of glioma cells to oxidative stress. Neuropathol Appl Neurobiol. 2011; 37: 395-405. [CrossRef]
- Vidal RL, Figueroa A, Court FA, Thielen P, Molina C, Wirth C, et al. Targeting the UPR transcription factor XBP1 protects against Huntington’s disease through the regulation of FoxO1 and autophagy. Hum Mol Genet. 2012; 21: 2245-2262. [CrossRef]
- Hetz C, Thielen P, Matus S, Nassif M, Court F, Kiffin R, et al. XBP-1 deficiency in the nervous system protects against amyotrophic lateral sclerosis by increasing autophagy. Genes Dev. 2009; 23: 2294-2306. [CrossRef]
- Heindryckx F, Binet F, Ponticos M, Rombouts K, Lau J, Kreuger J, et al. Endoplasmic reticulum stress enhances fibrosis through IRE1α-mediated degradation of miR-150 and XBP-1 splicing. EMBO Mol Med. 2016; 8: 729-744. [CrossRef]
- Chonghaile TN, Gupta S, John M, Szegezdi E, Logue SE, Samali A. BCL-2 modulates the unfolded protein response by enhancing splicing of X-box binding protein-1. Biochem Biophys Res Commun. 2015; 466: 40-45. [CrossRef]
- Li X, Han F, Shi Y. IRE1α-XBP1 pathway is activated upon induction of single-prolonged stress in rat neurons of the medial prefrontal cortex. J Mol Neurosci. 2015; 57: 63-72. [CrossRef]
- Oishi N, Duscha S, Boukari H, Meyer M, Xie J, Wei G, et al. XBP1 mitigates aminoglycoside-induced endoplasmic reticulum stress and neuronal cell death. Cell Death Dis. 2015; 6: e1763. [CrossRef]
- Tong J, Huang C, Bi F, Wu Q, Huang B, Zhou H. XBP1 depletion precedes ubiquitin aggregation and Golgi fragmentation in TDP-43 transgenic rats. J Neurochem. 2012; 123: 406-416. [CrossRef]
- Majumder M, Huang C, Snider MD, Komar AA, Tanaka J, et al. A novel feedback loop regulates the response to endoplasmic reticulum stress via the cooperation of cytoplasmic splicing and mRNA translation. Mol Cell Biol. 2012; 32: 992-1003. [CrossRef]
- Hayashi A, Kasahara T, Iwamoto K, Ishiwata M, Kametani M, Kakiuchi C, et al. The role of brain-derived neurotrophic factor (BDNF)-induced XBP1 splicing during brain development. J Biol Chem. 2007; 282: 34525-34534. [CrossRef]
- Tan Z, Zhang W, Sun J, Fu Z, Ke X, Zheng C, et al. ZIKV infection activates the IRE1-XBP1 and ATF6 pathways of unfolded protein response in neural cells. J Neuroinflammation. 2018; 15: 275. [CrossRef]
- Hosoi T, Kimura H, Yamawaki Y, Mori K, Ozawa K. Immobilization stress induces XBP1 splicing in the mouse brain. Biochem Biophys Res Commun. 2019; 508: 516-520. [CrossRef]
- Lee HG, Khummuang S, Youn HH, Park JW, Choi JY, Shin TS, et al. The effect of heat stress on frame switch splicing of X-box binding protein 1 gene in horse. Asian-australas J Anim Sci. 2019; 32: 1095-1103. [CrossRef]
- Zhao XH, Wang YB, Yang J, Liu HQ, Wang LL. MicroRNA-326 suppresses iNOS expression and promotes autophagy of dopaminergic neurons through the JNK signaling by targeting XBP1 in a mouse model of Parkinson’s disease. J Cell Biochem. 2019; 120: 14995-15006. [CrossRef]
- Jiao FJ, Wang QZ, Zhang P, Yan JG, Zhang Z, He F, et al. CDK5-mediated phosphorylation of XBP1s contributes to its nuclear translocation and activation in MPP+-induced Parkinson’s disease model. Sci Rep. 2017; 7: 5622. [CrossRef]
- Yang S, Alnaqeeb M, Simpson H, Goldspink G. Cloning and characterization of an IGF-1 isoform expressed in skeletal muscle subjected to stretch. J Muscle Res Cell Motil. 1996; 17: 487-495. [CrossRef]
- Chew SL, Lavender P, Clark AJ, Ross RJ. An alternatively spliced human insulin-like growth factor-I transcript with hepatic tissue expression that diverts away from the mitogenic IBE1 peptide. Endocrinology. 1995; 136: 1939-1944. [CrossRef]
- Smith PJ, Spurrell EL, Coakley J, Hinds CJ, Ross RJM, Krainer AR, et al. An exonic splicing enhancer in human IGF-I pre-mRNA mediates recognition of alternative exon 5 by the serine-arginine protein splicing factor-2/alternative splicing factor. Endocrinology. 2002; 143: 146-154. [CrossRef]
- Matheny RW, Nindl BC, Adamo ML. Minireview: Mechano-growth factor: A putative product of IGF-I gene expression involved in tissue repair and regeneration. Endocrinology. 2010; 151: 865-875. [CrossRef]
- Philippou A, Maridaki M, Pneumaticos S, Koutsilieris M. The complexity of the IGF1 gene splicing, posttranslational modification and bioactivity. Mol Med. 2014; 20: 202-214. [CrossRef]
- Yang H, Adamo ML, Koval AP, McGuinness MC, Ben-Hur H, Yang Y, et al. Alternative leader sequences in insulin-like growth factor I mRNAs modulate translational efficiency and encode multiple signal peptides. Mol Endocrinol. 1995; 9: 1380-1395. [CrossRef]
- Aperghis M, Johnson IP, Cannon J, Yang SY, Goldspink G. Different levels of neuroprotection by two insulin-like growth factor-I splice variants. Brain Res. 2004; 1009: 213-218. [CrossRef]
- Philippou A, Papageorgiou E, Bogdanis G, Halapas A, Sourla A, Maridaki M, et al. Expression of IGF-1 isoforms after exercise-induced muscle damage in humans: Characterization of the MGF E peptide actions in vitro. In Vivo. 2009; 23: 567-575.
- Stavropoulou A, Halapas A, Sourla A, Philippou A, Papageorgiou E, Papalois A, et al. IGF-1 expression in infarcted myocardium and MGF E peptide actions in rat cardiomyocytes in vitro. Mol Med. 2009; 15: 127-135. [CrossRef]
- Sha Y, Afandi R, Zhang B, Yang L, Lv Y. MGF E peptide pretreatment improves collagen synthesis and cell proliferation of injured human ACL fibroblasts via MEK-ERK1/2 signaling pathway. Growth Factors. 2017; 35: 29-38. [CrossRef]
- Zhang B, Luo Q, Mao X, Xu B, Yang L, Ju Y, et al. A synthetic mechano-growth factor E peptide promotes rat tenocyte migration by lessening cell stiffness and increasing F-actin formation via the FAK-ERK1/2 signaling pathway. Exp Cell Res. 2014; 322: 208-216. [CrossRef]
- Zhang B, Luo Q, Sun J, Xu B, Ju Y, Yang L, et al. MGF enhances tenocyte invasion through MMP-2 activity via the FAK-ERK1/2 pathway. Wound Repair Regen. 2015; 23: 394-402. [CrossRef]
- Quesada A, Micevych P, Handforth A. C-terminal mechano growth factor protects dopamine neurons: A novel peptide that induces heme oxygenase-1. Exp Neurol. 2009; 220: 255-266. [CrossRef]
- Riddoch-Contreras J, Yang SY, Dick JRT, Goldspink G, Orrell RW, Greensmith L. Mechano-growth factor, an IGF-I splice variant, rescues motoneurons and improves muscle function in SOD1(G93A) mice. Exp Neurol. 2009; 215: 281-289. [CrossRef]
- Dluzniewska J, Sarnowska A, Beresewicz M, Johnson I, Srai SKS, Ramesh B, et al. A strong neuroprotective effect of the autonomous C-terminal peptide of IGF-1 Ec (MGF) in brain ischemia. FASEB J. 2005; 19: 1896-1898. [CrossRef]
- Tang JJ, Podratz JL, Lange M, Scrable HJ, Jang M-H, Windebank AJ. Mechano growth factor, a splice variant of IGF-1, promotes neurogenesis in the aging mouse brain. Mol Brain. 2017; 10: 23. [CrossRef]
- Beresewicz M, Majewska M, Makarewicz D, Vayro S, Zabłocka B, Górecki DC. Changes in the expression of insulin-like growth factor 1 variants in the postnatal brain development and in neonatal hypoxia-ischaemia. Int J Dev Neurosci. 2010; 28: 91-97. [CrossRef]
- Hameed M, Orrell RW, Cobbold M, Goldspink G, Harridge SDR. Expression of IGF-I splice variants in young and old human skeletal muscle after high resistance exercise. J Physiol (Lond). 2003; 547: 247-254. [CrossRef]
- McKay BR, O’Reilly CE, Phillips SM, Tarnopolsky MA, Parise G. Co-expression of IGF-1 family members with myogenic regulatory factors following acute damaging muscle-lengthening contractions in humans. J Physiol (Lond). 2008; 586: 5549-5560. [CrossRef]
- Imanaka M, Iida K, Murawaki A, Nishizawa H, Fukuoka H, Takeno R, et al. Growth hormone stimulates mechano growth factor expression and activates myoblast transformation in C2C12 cells. Kobe J Med Sci. 2008; 54: E46-E54.
- Rigamonti AE, Locatelli L, Cella SG, Bonomo SM, Giunta M, Molinari F, et al. Muscle expressions of MGF, IGF-IEa, and myostatin in intact and hypophysectomized rats: Effects of rhGH and testosterone alone or combined. Horm Metab Res. 2009; 41: 23-29. [CrossRef]
- Iida K, Itoh E, Kim DS, del Rincon JP, Coschigano KT, Kopchick JJ, et al. Muscle mechano growth factor is preferentially induced by growth hormone in growth hormone-deficient lit/lit mice. J Physiol (Lond). 2004; 560: 341-349. [CrossRef]
- Hameed M, Lange KHW, Andersen JL, Schjerling P, Kjaer M, Harridge SDR, et al. The effect of recombinant human growth hormone and resistance training on IGF-I mRNA expression in the muscles of elderly men. J Physiol (Lond). 2004; 555: 231-240. [CrossRef]
- Chia DJ, Ono M, Woelfle J, Schlesinger-Massart M, Jiang H, Rotwein P. Characterization of distinct Stat5b binding sites that mediate growth hormone-stimulated IGF-I gene transcription. J Biol Chem. 2006; 281: 3190-3197. [CrossRef]
- Woelfle J, Billiard J, Rotwein P. Acute control of insulin-like growth factor-I gene transcription by growth hormone through Stat5b. J Biol Chem. 2003; 278: 22696-22702. [CrossRef]
- Woelfle J, Chia DJ, Rotwein P. Mechanisms of growth hormone (GH) action. Identification of conserved Stat5 binding sites that mediate GH-induced insulin-like growth factor-I gene activation. J Biol Chem. 2003; 278: 51261-51266. [CrossRef]
- Yi Q, Liu H, Feng J, Wu Y, Sun W, Ou M, et al. Splicing factor-modulated generation of mechano growth factor regulates physiological processes in osteoblasts under mechanical stimuli. Cell Adh Migr. 2019; 13: 322-331. [CrossRef]
- Kravchenko IV, Furalyov VA, Lisitsina ES, Popov VO. Stimulation of mechano-growth factor expression by second messengers. Arch Biochem Biophys. 2011; 507: 323-331. [CrossRef]
- Zhang B, Luo Q, Kuang D, Ju Y, Song G. Mechano-growth factor E peptide promotes healing of rat injured tendon. Biotechnol Lett. 2016; 38: 1817-1825. [CrossRef]
- Liu M, Niu X, Zhou G, Jia Z, Li P, Fan Y. Potential effect of mechano growth factor E-domain peptide on axonal guidance growth in primary cultured cortical neurons of rats. J Tissue Eng Regen Med. 2018; 12: 70-79. [CrossRef]
- Chen H, Lv K, Dai Z, Ji G, Wang T, Wang Y, Zhang Y, Kan G, et al. Intramuscular injection of mechano growth factor E domain peptide regulated expression of memory-related sod, miR-134 and miR-125b-3p in rat hippocampus under simulated weightlessness. Biotechnol Lett. 2016; 38: 2071-2080. [CrossRef]
- Gao H, Zhang M, Zhao J, Gao L, Li M. In vitro and in vivo degradation and mechanical properties of ZEK100 magnesium alloy coated with alginate, chitosan and mechano-growth factor. Mater Sci Eng C Mater Biol Appl. 2016; 63: 450-461. [CrossRef]